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采用综合分析方法对宫颈鳞状细胞癌中的 circRNA-miRNA-mRNA 网络进行全面分析
Authors Wu Q, Liu P, Lao G, Liu Y, Zhang W, Ma C
Received 17 March 2020
Accepted for publication 26 July 2020
Published 25 August 2020 Volume 2020:13 Pages 8641—8650
DOI https://doi.org/10.2147/OTT.S254323
Checked for plagiarism Yes
Review by Single anonymous peer review
Peer reviewer comments 2
Editor who approved publication: Dr Sanjay Singh
Purpose: Cervical squamous cell carcinoma (CSCC) seriously affects women’s health worldwide, and it is of great significance to illuminate the specific role of circRNAs in CSCC.
Materials and Methods: Three mRNA datasets, two miRNA datasets and one circRNA dataset of CSCC, downloaded from GEO, were utilized in this study. Differentially expressed mRNAs (DEmRNAs), miRNAs (DEmiRNAs) and circRNAs (DEcircRNAs) were identified, and a ceRNA (DEcircRNA-DEmiRNA-DEmRNA) regulatory network was constructed. GO and pathway analyses of DEcircRNAs and DEmRNAs in the ceRNA regulatory network were performed. Quantitative real-time polymerase chain reaction (qRT-PCR) validation of the expression of the selected DEmRNAs, DEmiRNAs and DEcircRNAs was performed.
Results: A total of 1356 DEmRNAs, 13 DEmiRNAs and 77 DEcircRNAs were obtained. The ceRNA network contained 3 circRNA-miRNA pairs and 158 miRNA-mRNA pairs, including 3 circRNAs, 3 miRNAs, and 138 mRNAs. Functional annotation of DEmRNAs in the ceRNA regulatory network revealed that these DEmRNAs were significantly enriched in cell cycle, p53 signalling pathway and DNA replication. The qRT-PCR results were generally consistent with those of our integrated analysis.
Conclusion: In conclusion, we speculate that the regulation of the hsa_circ_0000069/hsa-miR-125b-5p/CDKN2A and hsa_circ_0020594/hsa-let-7c-5p/CCNB2 axes may be involved in CSCC.
Keywords: cervical squamous cell carcinoma, CSCC, circRNA, ceRNA network, GEO
