已发表论文

综合生物信息学分析揭示了日光雀斑的诊断生物标志物和免疫细胞浸润特征

 

Authors Yang X, Xia Z, Fan Y, Xie Y, Ge G, Lang D, Ao J, Yue D, Wu J, Chen T, Zou Y, Zhang M, Yang R

Received 9 October 2023

Accepted for publication 26 December 2023

Published 12 January 2024 Volume 2024:17 Pages 79—88

DOI https://doi.org/10.2147/CCID.S439655

Checked for plagiarism Yes

Review by Single anonymous peer review

Peer reviewer comments 3

Editor who approved publication: Prof. Dr. Rungsima Wanitphakdeedecha

Background: Solar lentigines (SLs), serving as a prevalent characteristic of skin photoaging, present as cutaneous aberrant pigmentation. However, the underlying pathogenesis remains unclear and there is a dearth of reliable diagnostic biomarkers.
Objective: The aim of this study was to identify diagnostic biomarkers for SLs and reveal its immunological features.
Methods: In this study, gene expression profiling datasets (GSE192564 and GSE192565) of SLs were obtained from the GEO database. The GSE192564 was used as the training group for screening of differentially expressed genes (DEGs) and subsequent depth analysis. Gene set enrichment analysis (GSEA) was employed to explore the biological states associated with SLs. The weighted gene co-expression network analysis (WGCNA) was employed to identify the significant modules and hub genes. Then, the feature genes were further screened by the overlapping of hub genes and up-regulated differential genes. Subsequently, an artificial neural network was constructed for identifying SLs samples. The GSE192565 was used as the test group for validation of feature genes expression level and the model’s classification performance. Furthermore, we conducted immune cell infiltration analysis to reveal the immune infiltration landscape of SLs.
Results: The 9 feature genes were identified as diagnostic biomarkers for SLs in this study. And an artificial neural network based on diagnostic biomarkers was successfully constructed for identification of SLs. GSEA highlighted potential role of immune system in pathogenesis of SLs. SLs samples had a higher proportion of several immune cells, including activated CD8 T cell, dendritic cell, myeloid-derived suppressor cell and so on. And diagnostic biomarkers exhibited a strong relationship with the infiltration of most immune cells.
Conclusion: Our study identified diagnostic biomarkers for SLs and explored its immunological features, enhancing the comprehension of its pathogenesis.

Keywords: solar lentigines, photoaging, diagnostic biomarkers, immune infiltration, artificial neural network