已发表论文

活动性和潜伏性结核的血液转录特征

 

Authors Deng M, Lv XD, Fang ZX, Xie XS, Chen WY

Received 20 August 2018

Accepted for publication 27 December 2018

Published 30 January 2019 Volume 2019:12 Pages 321—328

DOI https://doi.org/10.2147/IDR.S184640

Checked for plagiarism Yes

Review by Single-blind

Peer reviewers approved by Dr Amy Norman

Peer reviewer comments 2

Editor who approved publication: Dr Eric Nulens

Background: Although the incidence of tuberculosis (TB) has dropped substantially, it still is a serious threat to human health. And in recent years, the emergence of resistant bacilli and inadequate disease control and prevention has led to a significant rise in the global TB epidemic. It is known that the cause of TB is Mycobacterium tuberculosis  infection. But it is not clear why some infected patients are active while others are latent.
Methods: We analyzed the blood gene expression profiles of 69 latent TB patients and 54 active pulmonary TB patients from GEO (Transcript Expression Omnibus) database.
Results: By applying minimal redundancy maximal relevance and incremental feature selection, we identified 24 signature genes which can predict the TB activation. The support vector machine predictor based on these 24 genes had a sensitivity of 0.907, specificity of 0.913, and accuracy of 0.911, respectively. Although they need to be validated in a large independent dataset, the biological analysis of these 24 genes showed great promise.
Conclusion: We found that cytokine production was a key process during TB activation and genes like CYBB, TSPO, CD36, and STAT1 worth further investigation.
Keywords: tuberculosis, blood gene expression, support vector machine, minimal redundancy maximal relevance, incremental feature selection




Figure 2 The heatmap of the 24 signature genes latent and active TB patients.